FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480032
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52361.090760615958936No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA42250.880149656689554No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21470.44726184921005263No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19070.3972651823211786No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17050.35518465435637625No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11560.24081727884807677No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11420.23790080661289245No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10810.22519332044530363No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10510.21894373708419437No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9010.1876958202786481No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8510.17727984801013266No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8080.16832211185920937No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7700.16040597293513764No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7240.15082327844810345No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6800.14165722285180987No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6710.1397823478434771No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6690.13936570895273648No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6270.13061629224718352No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6170.12853309779348043No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5810.12103359776014931No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5450.1135340977268182No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5190.10811779214719018No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4990.10395140323978401No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4850.10103493100459969No Hit

[OK]Adapter Content

Adapter graph