FastQCFastQC Report
Sun 21 May 2023
EGAF00007943557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453906
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19410.42762157803598105No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17370.3826783519054606No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16850.37122223544081817No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG15570.34302256414323673No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15060.3317867576106066No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13980.3079932849532723No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13920.3066714253611981No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12240.2696593567831225No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12030.26503284821086304No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11560.25467828140628235No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11330.2496111529699982No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG10580.23308790806907154No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10110.22273334126449087No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9970.2196490022163179No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9590.21127722479984842No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9460.20841319568368782No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9240.203566377179416No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9090.20026172819923066No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8370.1843994130943411No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7980.17580732574585928No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7620.1678761681934145No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7540.16611368873731566No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7180.15818253118487088No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7010.15443726234066085No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6810.15003106370041375No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6610.14562486506016664No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6600.14540455512815428No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6450.14209990614796897No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6300.13879525716778363No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6280.13835463730375894No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6040.1330671989354624No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5960.1313047194793636No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5940.13086409961533885No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5780.12733914070314117No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5700.12557666124704234No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5560.12249232219886937No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT5400.11896736328667169No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5370.11830643349063463No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG5360.11808612355862227No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5310.1169845738985605No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5280.11632364410252344No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5200.1145611646464246No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5100.11235806532630105No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4940.10883310641410335No Hit
GTTACCACGGTTGGCAACGGATTTGTTATAGTTGTGTGCAACCG4910.10817217661806629No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4790.10552845743391805No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4760.10486752763788099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)