FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428892
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22520.5250739113809537No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22340.5208770506327933No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14640.34134467418371056No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14400.3357488598528301No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13900.3240909133301624No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13830.32245880081698886No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13700.31942773472109526No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13640.3180287811383752No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12310.28701864338807903No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12040.2807233522658385No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10080.2350242018969811No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10070.23479104296652772No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9750.22732995719202037No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9550.22266677858295328No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8450.1970192962330843No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7970.18582766757132332No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7790.18163080682316293No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7140.16647547634369492No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7050.16437704596961475No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6680.15575016554284063No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6640.1548175298210272No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6580.15341857623830707No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6430.14992119228150677No Hit
TTTACCACGTTTGCTGCGGCCCTTACGAGACGGCAGTTTGCCAG6190.14432537795062628No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6120.14269326543745278No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6110.14246010650699942No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5550.12940320640161157No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5260.12264159741846431No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5120.11937737239211736No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT4930.11494735271350363No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG4910.11448103485259692No Hit
ATCAGAGGATTTCGCATCGTTTTCTTTTTTATCCGGGGTTGCCA4810.11214944554806339No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4500.1049215187040094No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4330.10095781688630237No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4290.10002518116448897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)