FastQCFastQC Report
Sun 21 May 2023
EGAF00007943560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428892
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37990.8857707767922928No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34990.8158230976562865No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31140.7260569094317451No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22910.5341671096686346No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21460.5003590647528982No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15630.36442740829859266No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15600.3637279315072326No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15230.3551010510804585No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14980.3492720778191246No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13970.32572302584333584No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13040.3040392453111739No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11070.25810693601186313No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10680.2490137377241823No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9840.22942838756610057No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8470.19748561409399104No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8450.1970192962330843No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8400.19585350158081755No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8300.193521912276284No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7160.16694179420460162No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7140.16647547634369492No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7120.16600915848278822No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6840.1594807084300943No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6690.15598332447329397No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6470.15085382800332017No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6360.1482890797683333No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6360.1482890797683333No Hit
TACCTGGAGACCCAGCAGAAAATCAACCACC6340.14782276190742658No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG5660.1319679546365985No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5660.1319679546365985No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA5540.12917004747115823No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5520.12870372961025153No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5260.12264159741846431No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4840.11284892233942344No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4600.10725310800854294No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4520.10538783656491611No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4330.10095781688630237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)