FastQCFastQC Report
Sun 21 May 2023
EGAF00007943561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420344
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG11180.2659726319395543No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11060.26311782730335154No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10250.2438478960089831No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9030.21482404887425538No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6130.1458329368326894No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5510.1310831128789753No Hit
AAACGCGTCACCGTCGCCGTGGCCACGAATGATAGCAGAAACGT4800.11419218544810918No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4490.10681727347125211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)