FastQCFastQC Report
Sun 21 May 2023
EGAF00007943562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420344
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35770.8509696819747635No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25260.6009363759206745No Hit
ATGTCCAACATGGACATCGATGGTATTAACA11550.2747749462345127No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9390.22338846278286356No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6130.1458329368326894No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6000.14274023181013645No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4560.1084825761757037No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4470.10634147269855167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)