FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396283
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34550.8718516817526868No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24340.6142075234112995No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12880.3250202506794387No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9940.2508308456330451No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9390.23695187530123674No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8130.2051564159956395No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7280.18370709821011752No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7120.17966957956813692No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4990.1259201126467701No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4990.1259201126467701No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4670.11784507536280889No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4380.11052707282421904No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4050.10219969062513405No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT3980.10043327621926754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)