FastQCFastQC Report
Sun 21 May 2023
EGAF00007943566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416489
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA15460.37119827894614266No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7870.1889605727882369No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7840.18824026564927285No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7800.18727985613065412No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6630.159187877711056No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6190.14862337300624986No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6070.14574214445039366No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5310.1274943635966376No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5090.12221211124423455No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC4430.10636535418702535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)