FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399874
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT56471.4121948413750331No Hit
ATGTCCAACATGGACATCGATGGTATTAACA18450.4613953395319526No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16850.4213827355617019No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15720.39312383400771245No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13440.3361058733501053No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12990.3248523284834723No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12620.31559941381535184No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11620.2905915363339452No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11430.28584003961247795No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11220.28058838534138253No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11060.2765871249443575No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10440.2610822409058854No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10150.2538299564362774No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9870.24682775074148355No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9700.24257641156964446No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9590.2398255450466897No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9470.2368245997489209No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8890.22232003080970508No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8400.21006617084381582No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8280.207065225546047No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7680.19206049905720302No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7350.18380789948833884No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7110.17780600889280124No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7030.1758053786942887No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6900.17255435462170582No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6880.1720541970720777No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6620.16555214892691197No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6480.16205104607951504No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6460.16155088852988692No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6410.16030049465581658No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6370.1593001795565603No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6300.15754962813286186No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6300.15754962813286186No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6260.15654931303360559No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5850.14629608326622887No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5790.14479561061734447No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5770.14429545306771632No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5720.143045059193646No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT5590.13979403512106314No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5470.13679308982329433No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5370.13429230207515366No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5140.12854049025443015No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4910.12278867843370661No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC4870.12178836333445035No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4720.11803718171223936No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4430.11078489724263142No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4380.10953450336856109No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4370.10928442459374704No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4330.10828410949449076No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4230.10578332174635009No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4210.10528316419672196No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4100.10253229767376724No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4100.10253229767376724No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC4030.10078174625006878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)