FastQCFastQC Report
Wed 31 May 2023
EGAF00007943571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392047
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10850.27675253222190194No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9860.25150045785326763No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9820.25048017202019146No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9070.23134981265001392No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8440.21528031077906476No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7720.1969151657836943No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6270.15992980433468434No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5610.1430950880889281No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5440.13875887329835454No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5370.1369733730904713No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5240.13365744413297384No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5030.12830094350932414No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4970.12677051475970993No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4910.12524008601009573No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4810.1226893714274054No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4610.11758794226202471No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4400.11223144163837499No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG4320.11019086997222272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)