FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392047
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34640.8835675314439341No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14120.3601608990758761No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11600.29588289159207953No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10140.25864245868480057No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9580.24435845702173464No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9350.23849181348154685No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9120.23262516994135904No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8060.20558759536484145No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6290.16043994725122243No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6120.15610373246064885No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5700.14539073121334942No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5660.1443704453802733No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5420.13824873038181645No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5320.1356980157991261No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5120.13059658663374546No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4830.12319951434394347No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4720.12039372830298409No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4490.1145270847627963No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4370.11146622726356788No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4090.10432422643203493No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA3980.10151844039107556No Hit

[OK]Adapter Content

Adapter graph