FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376434
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32620.8665529681165888No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17610.4678110903903473No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11410.3031075832682489No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10850.28823113746367224No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10480.2784020571999341No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10450.2776051047461175No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9090.2414765935064314No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8590.228194052609488No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8230.2186306231636887No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8160.21677106743811667No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7820.20773893962819512No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6170.16390655466828183No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5800.1540774744045437No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC5140.13654452042057835No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4820.12804369424653458No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4790.12724674179271797No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4680.12432458279539042No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4370.11608940743928552No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4020.10679162881142511No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG3800.10094731081677001No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3770.1001503583629534No Hit

[OK]Adapter Content

Adapter graph