FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381035
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16590.43539307412704864No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14420.3784429251905993No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9730.2553571194247248No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7810.20496804755468656No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6610.1734748776359127No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4730.12413557809650032No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4270.11206319629430367No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA3950.10366501764929731No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)