FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364583
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC14380.3944232177583705No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12850.3524574651039681No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12220.3351774493050965No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10610.29101740893020245No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7000.19200017554301765No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6840.18761160010203437No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5340.1464687053428163No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGGAGA4490.12315439831259273No Hit
CAGCAGTGCGCCGTTACGTTTGAAGACATCGTCTTCTTCTTCGC4220.11574867725593349No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG4170.11437724743062622No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT3770.10340580882816808No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT3750.10285723689804516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)