FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364583
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32640.8952693899605851No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27730.7605949811154114No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG14220.39003464231738727No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13110.3595889001955659No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7410.20324590011053725No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7390.20269732818041433No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5090.13961155621627996No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACA4550.12480011410296148No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4290.11766867901136367No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA4240.1162972491860564No Hit
GCGAAAAACACCACTATCGCACTGCAGGCTG4230.11602296322099494No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4230.11602296322099494No Hit
GCAGTTGCGCCGGAACCAGTAGCACCGGCTC3880.10642295444384406No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA3800.10422866672335244No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG3730.10230866496792226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)