FastQCFastQC Report
Wed 31 May 2023
EGAF00007943579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383162
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14510.37869099754150987No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13970.36459774194727035No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13020.33980405154999715No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12780.3335403823970018No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11130.2904776569701588No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10470.2732525667994216No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10140.26464002171405304No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9930.25915931120518215No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9160.23906337267265546No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7390.1928688126693148No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7250.18921500566340088No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7100.18530021244277878No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6890.17981950193390786No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6490.1693800533455823No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6480.16911906713087413No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4680.12214154848340911No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4240.11065815503625098No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4020.10491645831267192No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA3990.10413349966854751No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA3980.10387251345383938No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG3970.10361152723913122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)