FastQCFastQC Report
Wed 31 May 2023
EGAF00007943580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383162
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33770.8813504470693858No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19220.5016155046690434No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14150.3692954938120168No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12370.32283994759396806No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12320.3215350165204274No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12250.3197081130174704No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11580.30222203663202507No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10630.2774283462347519No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10370.27064270465234025No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8060.21035488905476013No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7850.2048741785458892No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7500.19573966103110432No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7240.18895401944869272No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7220.18843204701927643No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6860.1790365432897834No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4920.12840521763640445No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4630.1208366174098684No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4490.11718281040395445No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4330.11300703096862423No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4240.11065815503625098No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4170.10883125153329401No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4070.10622138938621263No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA3930.10256758238029867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)