FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383065
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34800.9084620103637763No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20940.5466435200292379No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19440.5074856747549371No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18710.48842885672144415No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11260.29394489185908396No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10760.2808922767676504No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10700.2793259629566784No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9440.24643337292626577No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8890.23207549632568886No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8390.21902288123425528No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7770.20283763852087766No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7550.1970944878806469No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7490.19552817406967485No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7450.19448396486236016No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7250.18926291882578675No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5840.15245454426794408No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5670.14801665513685666No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4970.12974299400884967No Hit
CCGGCTCGTTACGCCAACGCCATGGCGGTGG4850.1266103663869056No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4730.12347773876496156No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4720.12321668646313289No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4720.12321668646313289No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC4590.11982300653936015No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4550.11877879733204547No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4540.11851774503021681No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4280.11173038518267134No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4240.11068617597535667No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4100.10703144374975526No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4070.10624828684426925No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4000.10442092073146855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)