FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382184
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37950.992977204697214No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20540.5374374646767002No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20350.5324660373014046No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20220.5290645343604128No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18380.48092018504176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14340.375211939798631No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13980.36579239319280765No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG12920.3380570615201055No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12820.3354405207962657No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11360.2972390262282042No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC11040.28886609591191675No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10380.2715969271345739No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10330.270288656772654No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9660.25275783392292717No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9500.24857136876478345No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9170.23993678437611204No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7980.2087999497624181No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7950.20801498754526615No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7660.20042701944613067No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7580.1983337868670588No Hit
TGTGCAGCTCGCACCAAAACCGTGAACGCGG7490.19597890021560296No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7300.19100747284030728No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6890.180279655872564No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6750.17661649885918823No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6580.17216837962866052No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6580.17216837962866052No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6550.1713834174115086No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6260.16379544931237308No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6230.16301048709522115No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6060.15856236786469344No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6050.15830071379230945No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5750.15045109162078998No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5650.14783455089695016No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT5520.14443304795595838No Hit
ACCGCAGCTGACGCGGCGGAACAGGATGGCA5300.13867665836351076No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5020.13135034433675927No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4630.12114583551378394No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4540.11879094886232809No Hit
TCCCCGACCACTTCCCAGCTGTCTAGCTCTG4400.11512779184895235No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4390.11486613777656836No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4370.1143428296318004No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4340.11355786741464845No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4240.11094132669080863No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT4170.10910974818412074No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG4090.10701651560504888No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC3950.10335335859167312No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC3850.1007368178678333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)