FastQCFastQC Report
Sun 21 May 2023
EGAF00007943588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451977
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26680.5902955238872775No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16480.3646203236005372No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14170.3135115282414813No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11330.25067647247536934No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11090.24536646776274015No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10820.2393927124610323No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10210.2258964504830998No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10120.22390519871586384No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9520.2106301869342909No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8750.1935939218146056No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8390.18562891474566184No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8140.1800976598366731No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT7790.17235390296408887No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7460.16505264648422377No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7370.1630613947169878No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7340.16239764412790916No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7180.15885764098615637No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6720.1486801319536171No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6250.1382813727247183No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5970.13208636722665093No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5900.13053761585213405No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5880.13009511545941496No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5080.11239509975065103No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC4800.10620009425258364No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4610.10199634052175222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)