FastQCFastQC Report
Wed 31 May 2023
EGAF00007943590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398010
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33460.8406823949147006No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11660.2929574633803171No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9910.2489887188764101No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9060.22763247154594107No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG7400.1859249767593779No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6880.1728599783925027No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6720.16883997889500263No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5990.15049873118765858No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5750.1444687319414085No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5590.14044873244390843No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5500.13818748272656467No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5260.13215748348031459No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4950.1243687344539082No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4910.12336373457953317No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4270.10728373658953293No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4240.10652998668375167No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4070.10225873721765785No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4000.10049998743750156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)