FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514298
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29820.5798194820901501No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22240.43243411407394156No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13150.2556883363341876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13060.2539383781387444No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13040.2535494985397571No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11910.23157780119697138No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11630.2261334868111484No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT10400.20221739147342593No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9040.1757735787422856No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8480.16488494997063957No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8010.1557462793944367No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7590.14757980781570218No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7460.14505209042228437No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7230.14057997503392974No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7170.13941333623696767No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6640.1291080268638027No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6010.11685831949570094No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5960.11588612049823253No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.11335840310481471No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5210.10130313553620664No Hit

[OK]Adapter Content

Adapter graph