FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519372
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31070.5982224686737059No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28220.5433485055027996No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13940.2684010689833106No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12280.23643939218902832No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10980.21140916337422888No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10160.19562086519874003No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9460.1821430496830788No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7830.15075899355375338No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5890.11340619055320655No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5600.10782252412528978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)