FastQCFastQC Report
Wed 31 May 2023
EGAF00007943600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473987
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65861.3894895851573987No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18500.39030606324646033No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12960.2734252205229257No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12640.26667398051001395No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12470.26308738425315464No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11360.239669020458367No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11310.23861413920634955No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8590.18122859909659972No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8580.18101762284619619No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8220.17342247783167047No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6820.1438858027751816No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6810.14367482652477812No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6550.13818944401428732No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6380.13460284775742792No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5890.12426501148765684No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5460.11519303272030668No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5240.11055155521142986No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5070.10696495895457048No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4850.10232348144569366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)