FastQCFastQC Report
Wed 31 May 2023
EGAF00007943605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457568
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10410.2275071683334499No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8410.1837978180292328No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6790.14839324428281697No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6400.13986992097349465No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6290.1374659067067627No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5360.11714105881530178No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4800.10490244073012099No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA4680.10227987971186796No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4670.10206133296034688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)