FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457568
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65961.4415343730330794No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10760.23515630463668788No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10440.22816280858801316No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6910.15101580530107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6730.14708196377369046No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6370.13921428071893138No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6300.13768445345828378No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5040.11014756276662703No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG4870.10643226799076859No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4720.10315406671795231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)