FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427687
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11320.2646795436849846No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10470.24480519632347955No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7150.16717833368795404No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6730.15735806793285745No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6320.14777161802907265No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5040.1178431890611592No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4930.11527121469672916No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4790.11199779277836362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)