FastQCFastQC Report
Wed 31 May 2023
EGAF00007943608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427687
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62411.4592447280370926No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24810.580097127104635No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8220.1921966297783192No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7030.16437254347221214No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6680.15618898867629832No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5400.12626055970838487No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5350.12509148045182575No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5330.12462384874920211No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5290.1236885853439548No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4960.11597266225066463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)