FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479167
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12710.2652519893899204No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9120.1903303023789201No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8440.17613900790329887No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7120.1485912009800341No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7010.14629555040309536No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6610.13794773012331818No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6440.13439990650441289No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5960.12438252216868022No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5190.10831296813010913No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5010.10455644900420938No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4880.10184340741328181No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4810.1003825388643208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)