FastQCFastQC Report
Sun 21 May 2023
EGAF00007943610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479167
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27670.5774604678535876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12580.26253894779899284No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11930.24897373984435492No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8550.1784346584802376No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8250.1721737932704047No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7450.1554781527108503No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7340.15318250213391155No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7120.1485912009800341No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6790.1417042492492179No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6640.13857381664430146No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6290.13126947389949642No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5980.12479991318266909No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5340.11144340073502557No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5160.10768688160912583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)