FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418886
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58591.3987099115272412No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24560.5863170409132795No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23480.5605343697330538No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18560.4430799788009148No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC16140.3853076970822611No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14260.3404267509537201No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG11240.2683307630238299No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11050.263794922723605No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG10690.25520069899686315No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10320.24636774683326731No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10150.24230936340675027No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9590.22894057094292958No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8410.20077061539416452No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7890.18835673667775957No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7360.1757041295245007No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7340.1752266726507928No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7300.17427175890337704No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC7130.17021337547686005No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6590.15732203988674723No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6540.15612839770247752No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6470.15445729864449995No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6240.1489665445968593No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6020.14371451898607257No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5670.13535902369618463No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA5030.12008040373753241No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4920.11745439093213907No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4740.1131572790687681No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4520.10790525345798141No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4360.10408559846831836No Hit
GCATGCGCTGGTTTCAAAGTTGATAACCCGA4330.10336941315775652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)