FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454073
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21230.4675459672783892No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17510.3856208142743568No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12420.2735243011586243No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12060.26559606054533086No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10000.22022890592481825No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9030.1988667020501109No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8270.1821293051998247No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8190.18036747395242617No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8050.17728426926947868No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6370.14028581307410923No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6260.13786329510893622No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6190.1363216927674625No Hit
CGGAAACGGCTGCTGCGGCTGCTGCGGGATAATCTGTTCGCTAC6020.13257780136674058No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6010.13235757246081578No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5960.13125642793119166No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5590.1231079584119734No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4840.10659079046761204No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4760.1048289592202135No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4750.10460873031428866No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4690.10328735687873974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)