FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499238
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16880.33811528769845245No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15550.31147468742363366No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11410.22854830762081413No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5780.11577644329958858No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5110.10235599052956705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)