FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471445
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65881.397405847978025No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30410.6450381274591946No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11550.2449914624187339No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10110.21444707229899565No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9050.19196300734974386No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6960.14763121891206823No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6570.13935877992130577No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5880.12472292632226453No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5510.11687471497205401No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4940.10478422721632429No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)