FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508878
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16660.32738691788601587No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14750.2898533636745939No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13760.2703987989262652No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12980.25507096003364266No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11580.22755945432893543No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10510.20653280354033776No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8220.1615318406376381No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7970.15661907176179754No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7620.14974119533562072No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7590.14915166307051986No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7270.14286331890944393No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6530.12832152303695582No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5980.11751343151010654No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5610.1102425335738625No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5310.1043472109228538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)