FastQCFastQC Report
Sun 21 May 2023
EGAF00007943628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508878
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33560.6594900938928387No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30790.6050566147485251No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24420.4798792637921073No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13790.27098833119136606No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13380.26293139023498757No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11620.2283454973490699No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11050.21714438431215338No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10760.21144557241617834No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8550.16801669555374765No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8380.16467601271817608No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7920.1556365179866294No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7370.14482842645978014No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6550.12871454454702305No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6160.12105062510071175No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC5790.11377972716446771No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5640.11083206583896336No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5460.10729487224835814No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5390.1059192969631228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)