FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505166
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33850.670076766844958No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29950.5928744214772965No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16550.32761508098328074No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12500.24744341463994016No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12390.24526591259110864No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11300.22368884683450588No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11200.22170929951738638No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9050.17914903219931666No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6610.13084807766160034No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5420.10729146458787805No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5340.10570782673418241No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5300.10491600780733461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)