FastQCFastQC Report
Wed 31 May 2023
EGAF00007943632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510112
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38040.7457185872906342No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31740.6222162975973904No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18970.37187911674298973No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15000.29405307069819964No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC14730.288760115425632No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11900.233282102753905No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG10850.21269838780503106No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9090.17819616084310896No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9040.17721598394078164No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8560.16780628567843925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7700.15094724295840914No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6860.13448027099930995No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6840.13408820023837903No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6370.1248745373565021No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6350.12448246659557116No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5900.11566087447462518No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5870.11507276833322877No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5440.10664324697321373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)