FastQCFastQC Report
Sun 21 May 2023
EGAF00007943633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541101
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA48420.8948421828826781No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA43880.8109391777135877No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13820.2554051831358656No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC12820.23692434499289414No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11010.2034740279541158No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10980.20291960280982663No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT10030.18536280657400375No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8780.16226175889528943No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8620.15930482479241398No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8000.14784670514377168No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7340.1356493519694105No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7090.13102914243366764No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6590.12178872336218191No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6490.11994063954788477No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6230.1151356216307122No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6150.11365715457927449No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6050.11180907076497734No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC5680.1049711606520779No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5620.1038623103634996No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5530.10219903493063216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)