FastQCFastQC Report
Wed 31 May 2023
EGAF00007943634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541101
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT99591.8405066706585278No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31860.5887995032350707No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14960.27647333861885304No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12300.22731430915854897No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12270.22675988401425984No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12260.2265750756328301No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12000.2217700577156575No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10870.20088671061409977No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9940.18369953114113632No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9010.16651235166817285No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8580.15856559126669512No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8210.1517276811537957No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7650.14137841179373167No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7200.1330620346293945No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7200.1330620346293945No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6550.12104948983646306No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6340.11716851382643906No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6190.11439638810499334No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6150.11365715457927449No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5630.1040471187449293No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5530.10219903493063216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)