FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462969
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25770.5566247416133694No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT25370.5479848542775002No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23360.5045694204147578No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA20800.4492741414651953No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG18080.3905229075812851No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15210.32853171594642405No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC14320.30930796662411525No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG13420.2898682201184096No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12490.26978048206251387No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12160.26265257501042183No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA11530.249044752456428No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11530.249044752456428No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10020.21642917776352197No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9650.208437281977843No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9410.20325334957632152No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9170.19806941717480003No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8700.1879175495551538No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8270.1786296706690945No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8090.17474172136795338No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7850.16955778896643187No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA7150.1544379861286609No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA7120.1537899945784707No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7090.15314200302828052No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6900.14903805654374266No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6880.14860606217694922No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6830.14752607625996556No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6740.145582101609395No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6620.14299013540863426No Hit
CTGAGGCTGGGTCGCCGGAACCGGTGGAACCGGACCCATGCTGG6600.14255814104184084No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6550.14147815512485717No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6500.14039816920787354No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6390.1380222001905095No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5820.12571036073689598No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5800.12527836637010253No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5640.12182241143575488No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5490.11858245368480395No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5490.11858245368480395No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5350.11555849311724975No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5160.1114545466327119No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5090.10994256634893482No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4950.1069186057813806No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4940.10670260859798389No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT4840.10454263676401661No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)