FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507589
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31050.6117153839031185No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22690.4470152032451452No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14460.2848761497983605No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12710.2503994373400527No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10500.2068602747498468No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9840.1938576289084279No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8700.1713985133641588No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8520.16785233722559No Hit
ATTGTCGCACCGTCCGTTGAAGAAATCGTGG7040.1386948889751354No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6970.13731582047680307No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6170.12155503763871953No Hit
ACCGGCCCGACTCTGACTACCCACTCTTGCT5150.10146003952016297No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5120.10086901016373483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)