FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488102
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15150.3103859439215574No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13420.2749425325034522No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9480.1942216995627963No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9240.1893046945105736No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8600.17619268103797975No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8540.1749634297749241No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8280.16963667430168286No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7970.16328554277589521No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7950.16287579235487665No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7720.15816366251316324No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7700.15775391209214468No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7600.15570515998705187No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7480.15324665746094054No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7190.14730527635617147No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6910.14156877046191163No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6720.13767614146223536No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6130.12558850404218788No Hit
ACGAGAGCTGGAACGAGAGCTGGCCTGGGAACCGCCACGAGAAC5930.12149099983200233No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5870.12026174856894666No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5840.11964712293741882No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5290.10837898635940849No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5250.10755948551737138No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5190.10633023425431569No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4910.1005937283600559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)