FastQCFastQC Report
Wed 31 May 2023
EGAF00007943642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442235
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60871.3764175155742988No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19320.4368717989304329No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19160.43325381301796556No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12540.28355964588962884No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12060.2727056881522268No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11330.25619862742659444No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9320.21074767940122333No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9260.2093909346840481No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9000.20351170757628864No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8400.18994426040453605No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7430.16801022081020273No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7410.1675579725711443No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6540.14788517417210306No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5880.13296098228317524No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5230.11826291451377662No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5170.11690616979660136No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5140.11622779743801373No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5140.11622779743801373No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5050.11419268036225083No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5020.11351430800366322No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4870.11012244621072508No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4870.11012244621072508No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4530.10243422614673195No Hit

[OK]Adapter Content

Adapter graph