FastQCFastQC Report
Wed 31 May 2023
EGAF00007943644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446501
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65581.4687537093981873No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20070.4494950739192073No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19810.443672018651694No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13200.2956320366583725No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12000.26875639696215686No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11780.26382919635118396No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9580.21455719024145523No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9370.2098539532946175No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8730.19552027878996914No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8000.17917093130810458No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7740.17334787604059118No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7660.17155616672751012No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6320.1415450357334026No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5770.12922703420597043No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5730.1283311795494299No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5380.12049245130470033No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5170.11578921435786257No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5100.11422146870891667No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5080.11377354138064641No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4920.11019012275448432No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4910.10996615909034918No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4780.10705463145659248No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4510.10100761252494395No Hit

[OK]Adapter Content

Adapter graph