FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486029
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45220.9303971573712679No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29110.5989354544687663No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24240.49873567215125025No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17020.35018486551214023No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16000.32919846346617176No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14990.30841781045986966No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13950.28701991033456853No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10860.22344345707766408No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10860.22344345707766408No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10460.2152134954910098No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10440.2148019974116771No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10270.21130426373734904No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10140.20862952622168635No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9950.20472029446802556No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9840.20245705503169564No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9720.19998806655569934No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9210.18949486553271513No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8920.18352814338239076No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8640.17776717027173278No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC7490.15410603071010165No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7160.14731631240111187No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6740.13867485273512486No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6510.13394262482279864No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6490.13353112674346593No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6470.1331196286641332No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6420.13209088346580145No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6230.12818165171214063No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6230.12818165171214063No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6130.12612416131547707No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6080.12509541611714528No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5870.12077468628415176No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5620.11563096029249284No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5460.1123389756578311No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5330.10966423814216847No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5070.10431476311084317No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4930.10143427655551418No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4920.10122852751584782No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4880.10040553135718239No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4880.10040553135718239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)