FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471640
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11440.24255788313120177No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8010.16983292341616488No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6060.12848782970061912No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5530.1172504452548554No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5390.11428207955220084No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5100.10813332202527352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)