FastQCFastQC Report
Sun 21 May 2023
EGAF00007943650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502485
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29960.5962367035831915No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23560.4688697175040051No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18480.36777217230365084No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13900.2766251728907331No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13740.2734409982387534No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13570.27005781267102497No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11150.22189717105983264No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10630.2115486034408987No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9330.18567718439356398No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8370.166572136481686No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8200.16318895091395763No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6820.13572544454063307No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6690.13313830263589957No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6350.12637193150044282No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6190.12318775684846314No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6020.11980457128073474No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5960.11861050578624238No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5920.11781446212324746No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5650.11244116739803178No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5560.11065006915629322No Hit

[OK]Adapter Content

Adapter graph