FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422876
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60261.425004020090996No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46561.1010319810062525No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13290.314276525506295No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9670.22867223488682262No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9320.2203955769540007No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9240.21850376942649857No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8790.20786235208429893No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8740.2066799723796101No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7320.1731003887664469No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6440.15229050596392324No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5660.13384538257077724No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5510.1302982434567107No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5220.12344044116951543No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4310.10192113054417844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)