FastQCFastQC Report
Sun 21 May 2023
EGAF00007943653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459972
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20440.44437487499239087No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19250.4185037350099572No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG10760.23392728253024098No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10070.21892636943118277No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7340.15957493064795247No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6710.14587844477489934No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6490.1410955449462141No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6370.13848669049420398No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6220.13522562242919134No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5920.12870348629916603No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5290.1150070004261129No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5200.1130503595871053No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5030.10935448244675763No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5010.10891967337142261No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4810.10457158261807241No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4780.10391936900506987No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4690.10196272816606228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)